species:   Rhsol
pid:       PID0555
parent:    Rhi-milR-102
paralog:   
locus:     KB317725.1:327334-327414
matures:   ['UACUUCCAGUUGACUUUGAAUG', 'GUCAGAGUCAAUUAAGUUGU']
srr:       SRR1994871
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram KB317725.1:327334-327414

26 out of bounds
71 alignments
31 proper strand
31 stranded perfect matches

        *************************                    ***********************     
CUGGUAGCCAUACUUCCAGUUGACUUUGAAUGCAAAACUGGGUACUCAAGGUACCAGUCAGAGUCAAUUAAGUUGUUCAGA
((((..((...((((..((((((((((((........((((.((((...)))))))))))))))))))))))).)))))).
----------UACUUCCAGUUGACUUUGAAUG------------------------------------------------- l=22 a=0 c
--------------------------------------------------------GUCAGAGUCAAUUAAGUUGU----- l=20 a=0 c*
----------UACUUCCAGUUGACUUUGAAUGC------------------------------------------------ l=23 a=11 ma
-------------------------------------------------------AGUCAGAGUCAAUUAAGUUGU----- l=21 a=0 ma*

----------UACUUCCAGUUGACUUUGA---------------------------------------------------- l=19 a=1 
----------UACUUCCAGUUGACUUUGAA--------------------------------------------------- l=20 a=1 
----------UACUUCCAGUUGACUUUGAAUGC------------------------------------------------ l=23 a=11 (ma)
----------UACUUCCAGUUGACUUUGAAUGCA----------------------------------------------- l=24 a=2 
--------------------------UGAAUGCAAAACUGGGUAC------------------------------------ l=19 a=1 
----------------------------AAUGCAAAACUGGGUACUCAAG------------------------------- l=22 a=1 
----------------------------AAUGCAAAACUGGGUACUCAAGG------------------------------ l=23 a=1 
----------------------------AAUGCAAAACUGGGUACUCAAGGU----------------------------- l=24 a=4 
------------------------------UGCAAAACUGGGUACUCAAGG------------------------------ l=21 a=2 
------------------------------UGCAAAACUGGGUACUCAAGGU----------------------------- l=22 a=1 
------------------------------UGCAAAACUGGGUACUCAAGGUA---------------------------- l=23 a=1 
-------------------------------GCAAAACUGGGUACUCAAGGU----------------------------- l=21 a=1 
--------------------------------CAAAACUGGGUACUCAAGGUA---------------------------- l=21 a=1 
------------------------------------------UACUCAAGGUACCAGUCAG-------------------- l=19 a=1 
---------------------------------------------------UACCAGUCAGAGUCAAUUAAG--------- l=21 a=1 
---------------------------------------------------UACCAGUCAGAGUCAAUUAAGU-------- l=22 a=1 

mb-00111
ax-1011011
ku-01
ss-111110011000
fn-101
